RNA-RNA interaction

A web server for designing molecular switches composed of two interacting RNAs
The programmability of RNA-RNA interactions through intermolecular base-pairing has been successfully exploited to design a variety of …
Akito Taneda, Kengo Sato
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An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data
MOTIVATION: RNA-RNA interactions via base pairing play a vital role in the post-transcriptional regulation of gene expression. …
Yuki Kato, Tomoya Mori, Kengo Sato, Shingo Maegawa, Hiroshi Hosokawa, Tatsuya Akutsu
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Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming
We present a web-based tool set Rtips for fast and accurate prediction of RNA 2D complex structures. Rtips comprises two computational …
Yuki Kato, Kengo Sato, Kiyoshi Asai, Tatsuya Akutsu
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RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming
MOTIVATION: Considerable attention has been focused on predicting RNA-RNA interaction since it is a key to identifying possible targets …
Yuki Kato, Kengo Sato, Michiaki Hamada, Yoshihide Watanabe, Kiyoshi Asai, Tatsuya Akutsu
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